PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62153
Common NameMICPUN_62153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family HB-other
Protein Properties Length: 779aa    MW: 83753.7 Da    PI: 5.7518
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.3e-10693753455
               -SS--HHHHHHHHHHHH........H.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFe........k.nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               R +++ e +e+Le+ F         + ++ p++ee++ LA+ +gL+erqV  WF N Ra++
     62153 693 RKQHSGEATEVLERWFWdnfypteqRpKPVPTREEKRALATATGLSERQVADWFVNARARK 753
               7888889999999999866666664347778999*************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.568687756IPR001356Homeobox domain
SMARTSM003895.6E-9689760IPR001356Homeobox domain
CDDcd000864.03E-11693757No hitNo description
SuperFamilySSF466897.27E-13693762IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-18693760IPR009057Homeodomain-like
PfamPF059201.5E-9720752IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MAGAFPPGSL VDPMSHDDDY GGATVATITF DDHGAFGVEL KASQGRAGWK TSGLDTLLAP  60
SAIPAHGAPF DATAPAVPLA DAHDIVPERY RIRDVTHHAL DDLELFHRAV DGDDDTWDVL  120
LGAFEEHCLE RGHRANANAD LLDARRDDAA ADDHHPDPAD PTPPRRPRAS TSKSTSGDER  180
VRRPEEAEGT TGQMLSVDRR CSDDDGSNGS TNRTTVRQSP SHADLDEAVR RWSVGEGDGD  240
GGNRGSRDGG GWYESLHPAA DADHQTYRNT FTCAFDDDAY PFACATDPST HQATRRIAHA  300
PLEHDDDDDD DASPPRLIAT AGTSAAGHAS HVLRSLIFGK GELRRGKTKT ADRSKKVRRK  360
PAGCGRAKRT RSGFSAKDAA NDDVNGVGVG VARGRLADGD DDDDANEEEE DAAGTFAARN  420
PTRWVASESA AATSDAVDAD VSAAIHAATQ SGAKSGTIAA MTRALSSLRN GIADELVTLS  480
HTEARTVSAA MAADARAGRV NHRGLLFDDA DTAHSSGLSE PGRSIELFVG NSSSAVALRF  540
RECRFRILRQ FNRDAMRCLV AHCGVDAARE WDTGDVVDPR VFNDSEGSVL ERPPRAPLRL  600
DQNFLPPDHQ GAGEETTADR LCRTHSQTLT QLARDAPASL KASSGLLARK QLLLGGSDLG  660
RELRAESSSP RRTKKKVAGS NPTQRSRANL TARKQHSGEA TEVLERWFWD NFYPTEQRPK  720
PVPTREEKRA LATATGLSER QVADWFVNAR ARKWKPRMEQ IMREVCGEVG EEGVEGGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343360RRGKTKTADRSKKVRRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508597.10.0predicted protein
TrEMBLC1FHP50.0C1FHP5_MICSR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP722266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-12BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]